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1

How to do successful gene expression analysis using real-time PCR

Stefaan Derveaux, Jo Vandesompele, Jan Hellemans

Journal:

Year:

2010

Language:

english

File:

PDF, 194 KB

english, 2010

2

The human FOXL2 mutation database

Diane Beysen, Jo Vandesompele, Ludwine Messiaen, Anne De Paepe, Elfride De Baere

Journal:

Year:

2004

Language:

english

File:

PDF, 292 KB

english, 2004

3

A new recurrent inversion, inv(7)(p15q34), leads to transcriptional activation of HOXA10 and HOXA11 in a subset of T-cell acute lymphoblastic leukemias

Speleman, F, Cauwelier, B, Dastugue, N, Cools, J, Verhasselt, B, Poppe, B, Van Roy, N, Vandesompele, J, Graux, C, Uyttebroeck, A

Journal:

Year:

2005

Language:

english

File:

PDF, 283 KB

english, 2005

4

MicroRNA expression profiling to identify and validate reference genes for relative quantification in colorectal cancer

Kah Hoong Chang, Pieter Mestdagh, Jo Vandesompele, Michael J Kerin, Nicola Miller

Journal:

Year:

2010

Language:

english

File:

PDF, 1.17 MB

english, 2010

5

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

Vandesompele, Jo, De Preter, Katleen, Pattyn, Filip, Poppe, Bruce, Van Roy, Nadine, De Paepe, Anne, Speleman, Frank

Journal:

Year:

2002

Language:

english

File:

PDF, 969 KB

english, 2002

6

Pharmacologic activation of wild-type p53 by nutlin therapy in childhood cancer

Van Maerken, Tom, Rihani, Ali, Van Goethem, Alan, De Paepe, Anne, Speleman, Frank, Vandesompele, Jo

Journal:

Year:

2014

Language:

english

File:

PDF, 597 KB

english, 2014

7

Flexible, Scalable, and Efficient Targeted Resequencing on a Benchtop Sequencer for Variant Detection in Clinical Practice

De Leeneer, Kim, Hellemans, Jan, Steyaert, Wouter, Lefever, Steve, Vereecke, Inge, Debals, Eveline, Crombez, Brecht, Baetens, Machteld, Van Heetvelde, Mattias, Coppieters, Frauke, Vandesompele, Jo, De

Journal:

Year:

2015

Language:

english

File:

PDF, 874 KB

english, 2015

8

Nutritional effects of increasing dialysis dose by adding an icodextrin daytime dwell to Nocturnal Intermittent Peritoneal Dialysis (NIPD) in children

Van Hoeck, K. J. M., Rusthoven, E., Vermeylen, L., Vandesompel, A., Marescau, B., Lilien, M., Schroder, C. H.

Journal:

Nephrology Dialysis Transplantation

Year:

2003

Language:

english

File:

PDF, 78 KB

english, 2003

9

Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background

Ghimire, Sabitri, Van der Jeught, Margot, Neupane, Jitesh, Roost, Matthias S., Anckaert, Jasper, Popovic, Mina, Van Nieuwerburgh, Filip, Mestdagh, Pieter, Vandesompele, Jo, Deforce, Dieter, Menten, Bj

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 5.03 MB

english, 2018

10

Purification of high-quality RNA from a small number of fluorescence activated cell sorted zebrafish cells for RNA sequencing purposes

Loontiens, Siebe, Depestel, Lisa, Vanhauwaert, Suzanne, Dewyn, Givani, Gistelinck, Charlotte, Verboom, Karen, Van Loocke, Wouter, Matthijssens, Filip, Willaert, Andy, Vandesompele, Jo, Speleman, Frank

Journal:

Year:

2019

File:

PDF, 1.87 MB

2019

11

Purification of high-quality RNA from a small number of fluorescence activated cell sorted zebrafish cells for RNA sequencing purposes

Loontiens, Siebe, Depestel, Lisa, Vanhauwaert, Suzanne, Dewyn, Givani, Gistelinck, Charlotte, Verboom, Karen, Van Loocke, Wouter, Matthijssens, Filip, Willaert, Andy, Vandesompele, Jo, Speleman, Frank

Journal:

Year:

2019

Language:

english

File:

PDF, 1.87 MB

english, 2019

12

Molecular analysis of 1p36 breakpoints in two Merkel cell carcinomas

M. Van Gele, N. Van Roy, S. G. Ronan, L. Messiaen, J. Vandesompele, M. L. Geerts, J. M. Naeyaert, E. Blennow, I. Bar-Am, T. K. Das Gupta, P. van der Drift, R. Versteeg, J. H. Leonard, F. Speleman

Journal:

Genes, Chromosomes and Cancer

Year:

1998

Language:

english

File:

PDF, 196 KB

english, 1998

13

Genetic heterogeneity of neuroblastoma studied by comparative genomic hybridization

Jo Vandesompele, Nadine Van Roy, Mireille Van Gele, Geneviève Laureys, Peter Ambros, Pierre Heimann, Christine Devalck, Ed Schuuring, Penelope Brock, Jacques Otten, Jan Gyselinck, Anne De Paepe, Frank

Journal:

Genes, Chromosomes and Cancer

Year:

1998

Language:

english

File:

PDF, 235 KB

english, 1998

14

Chromosome 2 short arm translocations revealed by M-FISH analysis of neuroblastoma cell lines

Nadine Van Roy, Heidi Van Limbergen, Jo Vandesompele, Mireille Van Gele, Bruce Poppe, Genevieve Laureys, Anne De Paepe, Frank Speleman

Journal:

Pediatric Blood & Cancer

Year:

2000

Language:

english

File:

PDF, 90 KB

english, 2000

15

Multicentre analysis of patterns of DNA gains and losses in 204 neuroblastoma tumors: How many genetic subgroups are there?

Jo Vandesompele, Frank Speleman, Nadine Van Roy, Geneviève Laureys, Christian Brinkschmidt, Holger Christiansen, Fritz Lampert, Maria Lastowska, Nick Bown, Andy Pearson, James C. Nicholson, Fiona Ross

Journal:

Pediatric Blood & Cancer

Year:

2001

Language:

english

File:

PDF, 583 KB

english, 2001

16

Comparative genomic hybridization (CGH) analysis of stage 4 neuroblastoma reveals high frequency of 11q deletion in tumors lacking MYCN amplification

D. Plantaz, J. Vandesompele, N. Van Roy, M. Łastowska, N. Bown, V. Combaret, M.C. Favrot, O. Delattre, J. Michon, J. Bénard, O. Hartmann, J.C. Nicholson, F.M. Ross, C. Brinkschmidt, G. Laureys, H. Car

Journal:

International Journal of Cancer

Year:

2001

Language:

english

File:

PDF, 111 KB

english, 2001

17

Localization of the 17q breakpoint of a constitutional 1;17 translocation in a patient with neuroblastoma within a 25-kb segment located between the ACCN1 and TLK2 genes and near the distal breakpoints of two microdeletions in neurofibromatosis type 1 patients

Nadine Van Roy, Jo Vandesompele, Geert Berx, Katrien Staes, Mireille Van Gele, Els De Smet, Anne De Paepe, Geneviève Laureys, Pauline van der Drift, Rogier Versteeg, Frans Van Roy, Frank Speleman

Journal:

Genes, Chromosomes and Cancer

Year:

2002

Language:

english

File:

PDF, 213 KB

english, 2002

18

Combined M-FISH and CGH analysis allows comprehensive description of genetic alterations in neuroblastoma cell lines

Nadine Van Roy, Heidi Van Limbergen, Jo Vandesompele, Mireille Van Gele, Bruce Poppe, Helen Salwen, Geneviève Laureys, Nunes Manoel, Anne De Paepe, Frank Speleman

Journal:

Genes, Chromosomes and Cancer

Year:

2001

Language:

english

File:

PDF, 384 KB

english, 2001

19

Translocation–excision–deletion–amplification mechanism leading to nonsyntenic coamplification of MYC and ATBF1

Nadine Van Roy, Jo Vandesompele, Björn Menten, Helén Nilsson, Els De Smet, Mariano Rocchi, Anne De Paepe, Sven Påhlman, Frank Speleman

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 427 KB

english, 2006

20

EVI1 is consistently expressed as principal transcript in common and rare recurrent 3q26 rearrangements

Bruce Poppe, Nicole Dastugue, Jo Vandesompele, Barbara Cauwelier, Betty De Smet, Nurten Yigit, Anne De Paepe, Jose Cervera, Christian Recher, Véronique De Mas, Anne Hagemeijer, Frank Speleman

Journal:

Genes, Chromosomes and Cancer

Year:

2006

Language:

english

File:

PDF, 176 KB

english, 2006

21

ArrayCGH-based classification of neuroblastoma into genomic subgroups

Evi Michels, Jo Vandesompele, Katleen De Preter, Jasmien Hoebeeck, Joëlle Vermeulen, Alexander Schramm, Jan J. Molenaar, Björn Menten, Barbara Marques, Raymond L. Stallings, Valérie Combaret, Christin

Journal:

Genes, Chromosomes and Cancer

Year:

2007

Language:

english

File:

PDF, 857 KB

english, 2007

22

Aberrant splicing of the PTPRD gene mimics microdeletions identified at this locus in neuroblastomas

Prakash Nair, Katleen DePreter, Jo Vandesompele, Frank Speleman, Raymond L. Stallings

Journal:

Genes, Chromosomes and Cancer

Year:

2008

Language:

english

File:

PDF, 208 KB

english, 2008

23

Comprehensive NF1 screening on cultured Schwann cells from neurofibromas

Ophélia Maertens, Hilde Brems, Jo Vandesompele, Thomas De Raedt, Ine Heyns, Thorsten Rosenbaum, Sofie De Schepper, Anne De Paepe, Geert Mortier, Sandra Janssens, Frank Speleman, Eric Legius, Ludwine M

Journal:

Year:

2006

Language:

english

File:

PDF, 242 KB

english, 2006

24

The von Hippel-Lindau tumor suppressor gene expression level has prognostic value in neuroblastoma

Jasmien Hoebeeck, Jo Vandesompele, Helén Nilsson, Katleen De Preter, Nadine Van Roy, Els De Smet, Nurten Yigit, Anne De Paepe, Geneviève Laureys, Sven Påhlman, Frank Speleman

Journal:

International Journal of Cancer

Year:

2006

Language:

english

File:

PDF, 166 KB

english, 2006

25

High resolution tiling-path BAC array deletion mapping suggests commonly involved 3p21-p22 tumor suppressor genes in neuroblastoma and more frequent tumors

Jasmien Hoebeeck, Evi Michels, Björn Menten, Nadine Van Roy, Angelika Eggert, Alexander Schramm, Katleen De Preter, Nurten Yigit, Els De Smet, Anne De Paepe, Geneviève Laureys, Jo Vandesompele, Frank

Journal:

International Journal of Cancer

Year:

2007

Language:

english

File:

PDF, 237 KB

english, 2007

26

Identification of 2 putative critical segments of 17q gain in neuroblastoma through integrative genomics

Jo Vandesompele, Evi Michels, Katleen De Preter, Björn Menten, Alexander Schramm, Angelika Eggert, Peter F. Ambros, Valerie Combaret, Nadine Francotte, Francesca Antonacci, Anne De Paepe, Geneviève La

Journal:

International Journal of Cancer

Year:

2008

Language:

english

File:

PDF, 533 KB

english, 2008

27

Elimination of Primer–Dimer Artifacts and Genomic Coamplification Using a Two-Step SYBR Green I Real-Time RT-PCR

Jo Vandesompele, Anne De Paepe, Frank Speleman

Journal:

Analytical Biochemistry

Year:

2002

Language:

english

File:

PDF, 110 KB

english, 2002

28

Real-time quantitative allele discrimination assay using 3′ locked nucleic acid primers for detection of low-percentage mosaic mutations

Ophélia Maertens, Eric Legius, Frank Speleman, Ludwine Messiaen, Jo Vandesompele

Journal:

Analytical Biochemistry

Year:

2006

Language:

english

File:

PDF, 163 KB

english, 2006

29

Standardization of real-time PCR gene expression data from independent biological replicates

Erik Willems, Luc Leyns, Jo Vandesompele

Journal:

Analytical Biochemistry

Year:

2008

Language:

english

File:

PDF, 360 KB

english, 2008

30

The potential (radio-)biological impact of launch vibration

Philippe Baert, Tim Van Cleynenbreugel, Jo Vandesompele, Sofie De Schynkel, Jos Vander Sloten, Patrick Van Oostveldt

Journal:

Acta Astronautica

Year:

2006

Language:

english

File:

PDF, 383 KB

english, 2006

31

Selection of reference genes for quantitative real-time PCR in bovine preimplantation embryos

Karen Goossens, Mario Van Poucke, Ann Van Soom, Jo Vandesompele, Alex Van Zeveren, Luc J Peelman

Journal:

BMC Developmental Biology

Year:

2005

Language:

english

File:

PDF, 236 KB

english, 2005

32

Identification and expression analysis of genes associated with bovine blastocyst formation

Karen Goossens, Ann Van Soom, Mario Van Poucke, Leen Vandaele, Jo Vandesompele, Alex Van Zeveren, Luc J Peelman

Journal:

BMC Developmental Biology

Year:

2007

Language:

english

File:

PDF, 765 KB

english, 2007

33

Selection and validation of a set of reliable reference genes for quantitativesodgene expression analysis inC. elegans

David Hoogewijs, Koen Houthoofd, Filip Matthijssens, Jo Vandesompele, Jacques R Vanfleteren

Journal:

BMC Molecular Biology

Year:

2008

Language:

english

File:

PDF, 717 KB

english, 2008

34

A dual fluorescent multiprobe assay for prion protein genotyping in sheep

Mario Van Poucke, Jo Vandesompele, Marc Mattheeuws, Alex Van Zeveren, Luc J Peelman

Journal:

BMC Infectious Diseases

Year:

2005

Language:

english

File:

PDF, 1.08 MB

english, 2005

35

Quantitative Real Time Polymerase Chain Reaction for measurement of human Interleukin – 5 receptor alpha spliced isoforms mRNA

Claudina Pérez, Jo Vandesompele, Ina Vandenbroucke, Gabriele Holtappels, Frank Speleman, Philippe Gevaert, Paul Van cauwenberge, Claus Bachert

Journal:

BMC Biotechnology

Year:

2003

Language:

english

File:

PDF, 966 KB

english, 2003

36

Development of a new set of reference genes for normalization of real-time RT-PCR data of porcine backfat andlongissimus dorsimuscle, and evaluation withPPARGC1A

Tim Erkens, Mario Van Poucke, Jo Vandesompele, Karen Goossens, Alex Van Zeveren, Luc J Peelman

Journal:

BMC Biotechnology

Year:

2006

Language:

english

File:

PDF, 671 KB

english, 2006

37

Murine M cells express annexin V specifically

P Verbrugghe, W Waelput, B Dieriks, A Waeytens, J Vandesompele, CA Cuvelier

Journal:

The Journal of Pathology

Year:

2006

Language:

english

File:

PDF, 510 KB

english, 2006

38

Correlation between porcinePPARGC1AmRNA expression and its downstream target genes in backfat andlongissimus dorsimuscle

T. Erkens, J. Vandesompele, A. Van Zeveren, L. J. Peelman

Journal:

Journal of Applied Genetics

Year:

2009

Language:

english

File:

PDF, 199 KB

english, 2009

39

Structure and mutation analysis of the gene encoding DNA fragmentation factor 40 (caspase-activated nuclease), a candidate neuroblastoma tumour suppressor gene

Hannah Judson, Nadine van Roy, Lisa Strain, Jo Vandesompele, Mireille Van Gele, Frank Speleman, David T. Bonthron

Journal:

Year:

2000

Language:

english

File:

PDF, 194 KB

english, 2000

40

Rapid and easy prenatal diagnosis of sickle cell anemia using double-dye LNA probe technology

Hakim E. Housni, Jo Vandesompele, Pascal Vannuffel, Beatrice Gulbis, Jasmine Parma, Pascale Cochaux

Journal:

British Journal of Haematology

Year:

2007

Language:

english

File:

PDF, 94 KB

english, 2007

41

Comparison of miRNA profiles of microdissected Hodgkin/Reed-Sternberg cells and Hodgkin cell lines versus CD77+ B-cells reveals a distinct subset of differentially expressed miRNAs

Pieter Van Vlierberghe, An De Weer, Pieter Mestdagh, Tom Feys, Katleen De Preter, Pascale De Paepe, Kathleen Lambein, Jo Vandesompele, Nadine Van Roy, Bruno Verhasselt, Bruce Poppe, Frank Speleman

Journal:

British Journal of Haematology

Year:

2009

Language:

english

File:

PDF, 128 KB

english, 2009

42

Quantification and normalization of gene expression using SYBR Green I real-time RT-PCR

Vandesompele, Jo, Iso-Oja, Johanna, De Paepe, Anne, Speleman, Frank

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 29 KB

english, 2001

43

Integration of suppression subtractive hybridization, laser capture microdissection and microarray analysis for identification of genes implicated in neuroblastoma pathogenesis

Vandesompele, Jo, Van Roy, Nadine, Laureys, Geneviève, De Preter, Katleen, Berx, Geert, Strumane, Kristin, De Paepe, Anne, Van Roy, Frans, Speleman, Frank

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 29 KB

english, 2001

44

Escape from p53-mediated tumor surveillance in neuroblastoma: switching off the p14ARF-MDM2-p53 axis

Vandesompele, J, Rihani, A, De Paepe, A, Speleman, F, Van Maerken, T

Journal:

Cell Death & Differentiation

Year:

2009

Language:

english

File:

PDF, 541 KB

english, 2009

45

Monoallelic but not biallelic loss of Dicer1 promotes tumorigenesis in vivo

Lambertz, I, Nittner, D, Mestdagh, P, Denecker, G, Vandesompele, J, Dyer, M A, Marine, J-C

Journal:

Cell Death & Differentiation

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

46

MicroRNA miR-885-5p targets CDK2 and MCM5, activates p53 and inhibits proliferation and survival

Afanasyeva, E A, Mestdagh, P, Kumps, C, Vandesompele, J, Ehemann, V, Theissen, J, Fischer, M, Zapatka, M, Brors, B, Savelyeva, L

Journal:

Cell Death & Differentiation

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

47

Neuroblastoma cells with overexpressed MYCN retain their capacity to undergo neuronal differentiation

Edsjö, Anders, Nilsson, Helén, Vandesompele, Jo, Karlsson, Jenny, Pattyn, Filip, Culp, Lloyd A, Speleman, Frank, Påhlman, Sven

Journal:

Laboratory Investigation

Year:

2004

Language:

english

File:

PDF, 308 KB

english, 2004

48

Rapid detection of VHL exon deletions using real-time quantitative PCR

Hoebeeck, Jasmien, van der Luijt, Rob, Poppe, Bruce, De Smet, Els, Yigit, Nurten, Claes, Kathleen, Zewald, Richard, de Jong, Gert-Jan, De Paepe, Anne, Speleman, Frank, Vandesompele, Jo

Journal:

Laboratory Investigation

Year:

2004

Language:

english

File:

PDF, 344 KB

english, 2004

49

Pathological splice mutations outside the invariant AG/GT splice sites of BRCA1 exon 5 increase alternative transcript levels in the 5′ end of the BRCA1 gene

Claes, Kathleen, Vandesompele, Jo, Poppe, Bruce, Dahan, Karine, Coene, Ilse, De Paepe, Anne, Messiaen, Ludwine

Journal:

Year:

2002

Language:

english

File:

PDF, 177 KB

english, 2002

50

ID2 expression in neuroblastoma does not correlate to MYCN levels and lacks prognostic value

Vandesompele, Jo, Edsjö, Anders, De Preter, Katleen, Axelson, Håkan, Speleman, Frank, Påhlman, Sven

Journal:

Year:

2003

Language:

english

File:

PDF, 189 KB

english, 2003

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